Stem-loop sbi-MIR172c

Accession

MI0001502

Description

Sorghum bicolor sbi-MIR172c precursor miRNA

Literature search

4 open access papers mention sbi-MIR172c
(37 sentences)

Sequence

239213 reads, 2938.0 reads per million, 49 experiments

guGCAGCACCAUCAAGAUUCACAUgguccaacucaugcaucuucagugaugcucaugugauggcucgcaguugcuauauaugcauaugugaugagaugAGAAUCUUGAUGAUGCUGCAu
((((((((.(((((((((((.(((.(.(((.(.((((((((......)))))..))).).))))(((((..(((.......)))..)))))....))).))))))))))).))))))))

Structure

        C           A   ------------------------------g u   a u   --     uu 
guGCAGCA CAUCAAGAUUC CAU                               g cca c cau  gcauc  c
|||||||| ||||||||||| |||                               | ||| | |||  |||||   
uACGUCGU GUAGUUCUAAG gua                               c ggu g gua  cguag  a
        A           A   gaguaguguauacguauauaucguugacgcu -   a u   cu     ug 

Annotation confidence High

Genome context

chr4: 67645991-67646109 [-]

Mature sbi-miR172c-5p

• Accession: MIMAT0056336
• Description: Sorghum bicolor sbi-miR172c-5p mature miRNA
• Sequence: 3 - GCAGCACCAUCAAGAUUCACAU - 24
• Evidence: experimental ; unknown

Mature sbi-miR172c-3p

• Accession: MIMAT0001396
• Description: Sorghum bicolor sbi-miR172c-3p mature miRNA
• Sequence: 99 - AGAAUCUUGAUGAUGCUGCA - 118
• Evidence: not_experimental

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13