Stem-loop sbi-MIR395k

Accession

MI0010895

Description

Sorghum bicolor sbi-MIR395k precursor miRNA

Literature search

4 open access papers mention sbi-MIR395k
(31 sentences)

Sequence

1346 reads, 68.0 reads per million, 41 experiments

GUUCCCUUCAAGCACUUCACAUGaagcuucacauuggcagauguagucuugagaccaauGUGAAGUGUUUGGAGGAACUC
(((((.((((((((((((((((....(((((((((....))))).)....)))....)))))))))))))))))))))..

Structure

--     C                Gaag   ---- -     g 
  GUUCC UUCAAGCACUUCACAU    cuu    c acauu g
  ||||| ||||||||||||||||    |||    | |||||  
  CAAGG AGGUUUGUGAAGUGua    gag    g uguag c
CU     -                acca   uucu a     a 

Annotation confidence High

Genome context

chr7: 4623715-4623794 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from sbi-MIR395k

Mature sbi-miR395k-5p

• Accession: MIMAT0056424
• Description: Sorghum bicolor sbi-miR395k-5p mature miRNA
• Sequence: 1 - GUUCCCUUCAAGCACUUCACAUG - 23
• Evidence: experimental ; unknown

Mature sbi-miR395k-3p

• Accession: MIMAT0011355
• Description: Sorghum bicolor sbi-miR395k-3p mature miRNA
• Sequence: 60 - GUGAAGUGUUUGGAGGAACUC - 80
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556