Stem-loop sbi-MIR319b

Accession

MI0010886

Description

Sorghum bicolor sbi-MIR319b precursor miRNA

Literature search

6 open access papers mention sbi-MIR319b
(15 sentences)

Sequence

851609 reads, 22211.0 reads per million, 50 experiments

gagagcucucuucaguccacucuaaaauggcuguagaguuucauuAGCUGCCGACUCAUCCAUUCAccuaccaagaaccauggacaagcgauagguuuggucuugguagccgaguggguggcgcgggagcuaaaaucaagcucuacgcuguuuauggUUGGACUGAAGGGUGCUCCCuu
..((((.((((((((((((..((((((((((.(((((((((..((((((.(((..((((((((((..(((((((((.(((..(((.........)))))))))))))))..))))))))))..))).))))))....)))))))))))))))).))).)))))))))))).))))....

Structure

--ga    u            cu   -       u         --ca      G   AC          Ac         a   ug   aag 
    gagc cucuucagucca  cua aaauggc guagaguuu    uuAGCU CCG  UCAUCCAUUC  cuaccaaga cca  gac   c
    |||| ||||||||||||  ||| ||||||| |||||||||    |||||| |||  ||||||||||  ||||||||| |||  |||   g
    CUCG GGGAAGUCAGGU  ggu uuugucg caucucgaa    aaucga ggc  ggugggugag  gaugguucu ggu  uug   a
uuCC    U            -U   a       -         cuaa      g   gc          cc         -   --   gau 

Annotation confidence Low

Genome context

chr3: 58355317-58355495 [-]

Mature sbi-miR319b-5p

• Accession: MIMAT0056415
• Description: Sorghum bicolor sbi-miR319b-5p mature miRNA
• Sequence: 46 - AGCUGCCGACUCAUCCAUUCA - 66
• Evidence: experimental ; unknown

Mature sbi-miR319b-3p

• Accession: MIMAT0011346
• Description: Sorghum bicolor sbi-miR319b-3p mature miRNA
• Sequence: 158 - UUGGACUGAAGGGUGCUCCC - 177
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556