Stem-loop sbi-MIR169f

Accession

MI0001560

Description

Sorghum bicolor sbi-MIR169f precursor miRNA

Literature search

5 open access papers mention sbi-MIR169f
(24 sentences)

Sequence

37508 reads, 2111.0 reads per million, 50 experiments

cgaugagagcacugcucuggUAGCCAAGGAUGACUUGCCUGUggccuccacuccaccugcggcaggaggcucuucuucugcgcgcgcgugugugugugguugucgaucgcaGGCAGUCUCCUUGGCUAGCCUcagcggcucucauccu
.(((((((((.(.(((..((((((((((((.((((.(((((((((..((((.((((((((((((((((......))))))).)))).).))).).))))..)))....))))))))))))))))))).)))..)))))))))))))..

Structure

-c         a u   cu   -         U    U      ----   cu    u -   - -    -       gc 
  gaugagagc c gcu  ggU AGCCAAGGA GACU GCCUGU    ggc  ccac c cac c ugcg gcaggag  u
  ||||||||| | |||  ||| ||||||||| |||| ||||||    |||  |||| | ||| | |||| |||||||   
  cuacucucg g cga  CCG UCGGUUCCU CUGA CGGacg    cug  ggug g gug g gcgc cgucuuc  c
uc         - -   cU   A         -    -      cuag   uu    u u   u c    g       uu 

Annotation confidence High

Genome context

chr2: 64543540-64543687 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sbi-MIR169f

Mature sbi-miR169f-5p

• Accession: MIMAT0001456
• Description: Sorghum bicolor sbi-miR169f-5p mature miRNA
• Sequence: 21 - UAGCCAAGGAUGACUUGCCUGU - 42
• Evidence: not_experimental

Mature sbi-miR169f-3p

• Accession: MIMAT0056376
• Description: Sorghum bicolor sbi-miR169f-3p mature miRNA
• Sequence: 112 - GGCAGUCUCCUUGGCUAGCCU - 132
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13