Stem-loop sbi-MIR169g

Accession

MI0001561

Description

Sorghum bicolor sbi-MIR169g precursor miRNA

Literature search

6 open access papers mention sbi-MIR169g
(26 sentences)

Sequence

29818 reads, 1769.0 reads per million, 50 experiments

gcgauaagagucugcccagaUAGCCAAGGAUGACUUGCCUGUggccucuuggcuuggcuugagagcuuauuaacucugugcacguuuaauuugcucuucuuguggccucgaucacaGGCAGUCUCCUUGGCUAGUCcgggcggcucuuaucu
..((((((((.((((((.((((((((((((.((((.((((((((..((..((((..((..((((((..(((((............)))))..)))).))..))))))..))))))))))))))))))))))).))).)))))))))))))).

Structure

gc        u      a   -         U    U        cc  uu    ug  uu  -    uu     cucug 
  gauaagag cugccc gaU AGCCAAGGA GACU GCCUGUgg  uc  ggcu  gc  ga gagc  auuaa     u
  |||||||| |||||| ||| ||||||||| |||| ||||||||  ||  ||||  ||  || ||||  |||||      
  cuauucuc ggcggg CUG UCGGUUCCU CUGA CGGacacu  ag  ccgg  ug  cu cucg  uaauu     g
-u        -      c   A         -    -        --  cu    --  uu  u    uu     ugcac 

Annotation confidence High

Genome context

chr2: 64546373-64546524 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sbi-MIR169g

Mature sbi-miR169g-5p

• Accession: MIMAT0001457
• Description: Sorghum bicolor sbi-miR169g-5p mature miRNA
• Sequence: 21 - UAGCCAAGGAUGACUUGCCUGU - 42
• Evidence: not_experimental

Mature sbi-miR169g-3p

• Accession: MIMAT0056377
• Description: Sorghum bicolor sbi-miR169g-3p mature miRNA
• Sequence: 117 - GGCAGUCUCCUUGGCUAGUC - 136
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13