Stem-loop sbi-MIR169n

Accession

MI0010879

Description

Sorghum bicolor sbi-MIR169n precursor miRNA

Literature search

6 open access papers mention sbi-MIR169n
(27 sentences)

Sequence

26700 reads, 1395.0 reads per million, 50 experiments

ggUAGCCAAGGAUGACUUGCCUAUauccucuaugaaggaucagcaaauaucgaggcuuugaguggucucaugGGCAGUCUCCUUGGCUAGCCU
((((((((((((.((((.(((((((((((......)))))...........((((((......))))))))))))))))))))))))).))).

Structure

-   -         U    U      auccucuaugaaggaucagcaaauauc      uu 
 ggU AGCCAAGGA GACU GCCUAU                           gaggcu  g
 ||| ||||||||| |||| ||||||                           ||||||   
 CCG UCGGUUCCU CUGA CGGgua                           cucugg  a
U   A         -    -      ---------------------------      ug 

Annotation confidence High

Genome context

chr7: 62255445-62255537 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from sbi-MIR169n

Mature sbi-miR169n-5p

• Accession: MIMAT0011339
• Description: Sorghum bicolor sbi-miR169n-5p mature miRNA
• Sequence: 3 - UAGCCAAGGAUGACUUGCCUAU - 24
• Evidence: not_experimental

Mature sbi-miR169n-3p

• Accession: MIMAT0056410
• Description: Sorghum bicolor sbi-miR169n-3p mature miRNA
• Sequence: 73 - GGCAGUCUCCUUGGCUAGCCU - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556