Stem-loop zma-MIR169c

Accession

MI0001826

Description

Zea mays zma-MIR169c precursor miRNA

Literature search

33 open access papers mention zma-MIR169c
(226 sentences)

Sequence

17887 reads, 31354.0 reads per million, 115 experiments

augagguagagaacggGAUGCAGCCAAGGAUGACUUGCCGGcuccuggaaccuggaggcgucucagcuugcugugcuguggcuuagaacuuAGUCGGCAAGUCUGUCCUUGGCUACAccuaguucucuuccucu
..((((.((((((((((.((.((((((((((((((((((((((((........)))...(((.((((.......)))).)))..........))))))))))).)))))))))).))))).))))))).)))).

Structure

au    u       -   A  C          -           uccuggaaccuggaggc   u    uu 
  gagg agagaac ggG UG AGCCAAGGAU GACUUGCCGGc                 guc cagc  g
  |||| ||||||| ||| || |||||||||| |||||||||||                 ||| ||||  c
  cucc ucucuug ucc AC UCGGUUCCUG CUGAACGGCUG                 cgg gucg  u
-u    u       a   -  A          U           -------Auucaagauu   u    ug 

Annotation confidence Medium

Genome context

2: 11801045-11801178 [+]

Mature zma-miR169c-5p

• Accession: MIMAT0001728
• Description: Zea mays zma-miR169c-5p mature miRNA
• Sequence: 17 - GAUGCAGCCAAGGAUGACUUGCCGG - 41
• Evidence: experimental ; Illumina [3]

Mature zma-miR169c-3p

• Accession: MIMAT0015193
• Description: Zea mays zma-miR169c-3p mature miRNA
• Sequence: 92 - AGUCGGCAAGUCUGUCCUUGGCUACA - 117
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


3. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13