Stem-loop sbi-MIR160c

Accession

MI0001509

Description

Sorghum bicolor sbi-MIR160c precursor miRNA

Literature search

3 open access papers mention sbi-MIR160c
(11 sentences)

Sequence

197495 reads, 11928.0 reads per million, 50 experiments

UGCCUGGCUCCCUGUAUGCCAcucaucuagaucaacaacuaccuaugguugccuaugaugguugGCGUGCACGGUGCCAAGCA
(((.((((.((.(((((((((.((((((((.....((((((....)))))).))).))))).))))))))).)).)))).)))

Structure

   C    U  C         c     -   aucaa      c 
UGC UGGC CC UGUAUGCCA ucauc uag     caacua c
||| |||| || ||||||||| ||||| |||     ||||||  
ACG ACCG GG ACGUGCGgu gguag auc     guuggu u
   A    U  C         u     u   ----c      a 

Annotation confidence High

Genome context

chr7: 2618794-2618876 [+]

Mature sbi-miR160c-5p

• Accession: MIMAT0001403
• Description: Sorghum bicolor sbi-miR160c-5p mature miRNA
• Sequence: 1 - UGCCUGGCUCCCUGUAUGCCA - 21
• Evidence: not_experimental

Mature sbi-miR160c-3p

• Accession: MIMAT0056343
• Description: Sorghum bicolor sbi-miR160c-3p mature miRNA
• Sequence: 65 - GCGUGCACGGUGCCAAGCA - 83
• Evidence: experimental ; unknown

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13