Stem-loop sbi-MIR395l

Accession

MI0010896

Description

Sorghum bicolor sbi-MIR395l precursor miRNA

Literature search

4 open access papers mention sbi-MIR395l
(33 sentences)

Sequence

1354 reads, 67.0 reads per million, 39 experiments

GUUCCCUUCAAGCACUUCACAUGGAgcauuauuugucuuggagaaagcuuaauuugaugcauuGUGAAGUGCUUGGGGGAACUC
(((((((.(((((((((((((....((((((.(((.(((.....)))..)))..))))))..))))))))))))))))))))..

Structure

--       U             UGGA      -u   -u   g 
  GUUCCCU CAAGCACUUCACA    gcauua  uug  cuu g
  ||||||| |||||||||||||    ||||||  |||  ||| a
  CAAGGGG GUUCGUGAAGUGu    cguagu  aau  gaa g
CU       -             --ua      uu   uc   a 

Annotation confidence High

Genome context

chr7: 4624021-4624104 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from sbi-MIR395l

Mature sbi-miR395l-5p

• Accession: MIMAT0056425
• Description: Sorghum bicolor sbi-miR395l-5p mature miRNA
• Sequence: 1 - GUUCCCUUCAAGCACUUCACAUGGA - 25
• Evidence: experimental ; unknown

Mature sbi-miR395l-3p

• Accession: MIMAT0011356
• Description: Sorghum bicolor sbi-miR395l-3p mature miRNA
• Sequence: 64 - GUGAAGUGCUUGGGGGAACUC - 84
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556