Stem-loop sbi-MIR164c

Accession

MI0001852

Description

Sorghum bicolor sbi-MIR164c precursor miRNA

Literature search

5 open access papers mention sbi-MIR164c
(13 sentences)

Sequence

181557 reads, 1032.0 reads per million, 38 experiments

uaugguguguuugugcagggUGGAGAAGCAGGACACGUGAGcgaccauccaguuuccaucgcuggcucuccgcugcgggcgcugccgugcguuggaucgucguuggGUGGUCGCUCAUGUGUCCGUCcucuccaccgagcaccgguacauccg
...((((((((.((((..((((((((.(..((((((((((((((((((((((..((((.(((((((....((((...))))..)))).))).))))......))))))))))))))))))))))..).))))))))..)))).))))))))..

Structure

uau        u    ag        A CA                      ----uu    u   -    ucuc    g 
   gguguguu gugc  ggUGGAGA G  GGACACGUGAGcgaccauccag      ucca cgc uggc    cgcu  
   |||||||| ||||  |||||||| |  ||||||||||||||||||||||      |||| ||| ||||    |||| c
   cuacaugg cacg  ccaccucu C  CCUGUGUACUCGCUGGUGgguu      aggu gcg gccg    gcgg  
-gc        c    ag        c UG                      gcugcu    u   u    --uc    g 

Annotation confidence Medium

Genome context

chr1: 68718394-68718546 [-]

Mature sbi-miR164c-5p

• Accession: MIMAT0001754
• Description: Sorghum bicolor sbi-miR164c-5p mature miRNA
• Sequence: 21 - UGGAGAAGCAGGACACGUGAG - 41
• Evidence: not_experimental

Mature sbi-miR164c-3p

• Accession: MIMAT0056390
• Description: Sorghum bicolor sbi-miR164c-3p mature miRNA
• Sequence: 107 - GUGGUCGCUCAUGUGUCCGUC - 127
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13