Stem-loop zma-MIR164d

Accession

MI0001470

Description

Zea mays zma-MIR164d precursor miRNA

Literature search

28 open access papers mention zma-MIR164d
(207 sentences)

Sequence

1587 reads, 2975 reads per million, 3 experiments

ugagugagaaggaccacgcUGGAGAAGCAGGGCACGUGCAugcacauacgccauucucgaucucuccucuccaccacuacugcaucuagcuaucuccauggauggauguacguagcucggacuggaucgaucggagaagcaauaagcuagcgagcucaugcaugcuggcugugcacgCACGUGGUCUCCUUCUCCAUcacgguucuuucucacuuc
.((((((((((((((....((((((((.(((.(((((((.(((((....((..(((((((((..(((..(((....((((((((((((.((((....)))).)))))))).))))...)))..)))..)))).)))))))....((((((((.((....)).))))))))))))).))))))).))).))))))))....)).)))))))))))).

Structure

u            -  acgc        C   G       A     --------------------------auac  ca     -    uc   uc   acca    -        g    c 
 gagugagaagga cc    UGGAGAAG AGG CACGUGC ugcac                              gc  uucuc gauc  ucc  ucc    cuac ugcaucua cuau u
 |||||||||||| ||    |||||||| ||| ||||||| |||||                              ||  ||||| ||||  |||  |||    |||| |||||||| ||||  
 uucacucuuucu gg    ACCUCUUC UCU GUGCACg acgug                              cg  aagag cuag  agg  agg    gaug auguaggu ggua c
c            u  cacU        C   G       c     ucggucguacguacucgagcgaucgaauaa  --     g    cu   uc   -cuc    c        a    c 

Annotation confidence Not enough data

Genome context

chr7: 178154786-178155001 [+]

Mature zma-miR164d-5p

• Accession: MIMAT0001365
• Description: Zea mays zma-miR164d-5p mature miRNA
• Sequence: 20 - UGGAGAAGCAGGGCACGUGCA - 40
• Evidence: experimental ; Illumina [2]

Mature zma-miR164d-3p

• Accession: MIMAT0015137
• Description: Zea mays zma-miR164d-3p mature miRNA
• Sequence: 178 - CACGUGGUCUCCUUCUCCAU - 197
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716