Stem-loop sbi-MIR395d

Accession

MI0001536

Description

Sorghum bicolor sbi-MIR395d precursor miRNA

Literature search

4 open access papers mention sbi-MIR395d
(31 sentences)

Sequence

16463 reads, 705.0 reads per million, 49 experiments

ucaaguuugguguccccaggAGUUCUCUGCAAACACUUCACAaagcacuuuuuuagagcuuuuGUGAAGUGUUUGGGGGAACUCuuggugccacugaucauuu
....(.((((((.(.(((((((((((((.(((((((((((((((((.((.....)).)).)))))))))))))))))))))))))))).).)))))).)....

Structure

ucaa u      u c             G               -  a  u 
    g uuggug c ccaggAGUUCUCU CAAACACUUCACAaa gc cu u
    | |||||| | ||||||||||||| ||||||||||||||| || || u
    c agucac g gguuCUCAAGGGG GUUUGUGAAGUGuuu cg ga u
uuua u      c u             -               u  a  u 

Annotation confidence Medium

Genome context

chr6: 57228519-57228621 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from sbi-MIR395d

Mature sbi-miR395d-5p

• Accession: MIMAT0056355
• Description: Sorghum bicolor sbi-miR395d-5p mature miRNA
• Sequence: 21 - AGUUCUCUGCAAACACUUCACA - 42
• Evidence: experimental ; unknown

Mature sbi-miR395d-3p

• Accession: MIMAT0001432
• Description: Sorghum bicolor sbi-miR395d-3p mature miRNA
• Sequence: 64 - GUGAAGUGUUUGGGGGAACUC - 84
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13