Stem-loop sbi-MIR169c

Accession

MI0001557

Description

Sorghum bicolor sbi-MIR169c precursor miRNA

Literature search

4 open access papers mention sbi-MIR169c
(25 sentences)

Sequence

21463 reads, 1183.0 reads per million, 50 experiments

uggcgagagccugccuuuggUAGCCAAGGAUGACUUGCCUACAcggccuugcgaguuccgguugcauggccaguucaguuggguuugUGGGCGGUCACCUUGGCUAGCCUGaguggcucuugccug
.((((((((((...(((.(((((((((((.(((((.(((((((.((((.(((((.......))))).))))..............)))))))))))))))))))).))).))).))))))))))..

Structure

-u          ugc   u   -        A     U       -------------c    u     gu 
  ggcgagagcc   cuu ggU AGCCAAGG UGACU GCCUACA              ggcc ugcga  u
  ||||||||||   ||| ||| |||||||| ||||| |||||||              |||| |||||  c
  ccguucucgg   gaG CCG UCGGUUCC ACUGG CGGGUgu              ccgg acguu  c
gu          --u   U   A        -     -       uuggguugacuuga    u     gg 

Annotation confidence High

Genome context

chr6: 39850630-39850755 [+]

Mature sbi-miR169c-5p

• Accession: MIMAT0001453
• Description: Sorghum bicolor sbi-miR169c-5p mature miRNA
• Sequence: 21 - UAGCCAAGGAUGACUUGCCUACA - 43
• Evidence: not_experimental

Mature sbi-miR169c-3p

• Accession: MIMAT0056375
• Description: Sorghum bicolor sbi-miR169c-3p mature miRNA
• Sequence: 88 - UGGGCGGUCACCUUGGCUAGCCUG - 111
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13