Stem-loop sbi-MIR169h

Accession

MI0010874

Description

Sorghum bicolor sbi-MIR169h precursor miRNA

Literature search

4 open access papers mention sbi-MIR169h
(24 sentences)

Sequence

13494 reads, 827.0 reads per million, 50 experiments

UAGCCAAGGAUGACUUGCCUAgcuauaugccugagagccugucucuuggugguaaauuuguaugugcugagcauAUAGGCAUGUCUUCCUUGGCUACU
((((((((((.(((.((((((((((((((((((((((.....)))))))..........))))))....)))...)))))).))).))))))))))..

Structure

--          U   U      ---   ----      ----------       c 
  UAGCCAAGGA GAC UGCCUA   gcu    auaugc          cugagag c
  |||||||||| ||| ||||||   |||    ||||||          ||||||| u
  AUCGGUUCCU CUG ACGGAU   cga    uguaug          gguucuc g
UC          U   U      Aua   gucg      uuuaaauggu       u 

Annotation confidence Medium

Genome context

Unknown

Mature sbi-miR169h-5p

• Accession: MIMAT0011334
• Description: Sorghum bicolor sbi-miR169h-5p mature miRNA
• Sequence: 1 - UAGCCAAGGAUGACUUGCCUA - 21
• Evidence: not_experimental

Mature sbi-miR169h-3p

• Accession: MIMAT0056406
• Description: Sorghum bicolor sbi-miR169h-3p mature miRNA
• Sequence: 75 - AUAGGCAUGUCUUCCUUGGCUACU - 98
• Evidence: experimental ; unknown

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556