Stem-loop zma-MIR395n

Accession

MI0013222

Description

Zea mays zma-MIR395n precursor miRNA

Literature search

19 open access papers mention zma-MIR395n
(86 sentences)

Sequence

5 reads, 15 reads per million, 2 experiments

aGUUCUCUACAAGCACUUCACGAggcuucguacugagagcuuuuGUGAAGUGUUUGGGGGAACUCu
((((((((.(((((((((((((((((((........)))).)))))))))))))))))))))))..

Structure

--        A               -    cgu 
  aGUUCUCU CAAGCACUUCACGAg gcuu   a
  |||||||| ||||||||||||||| ||||    
  UCAAGGGG GUUUGUGAAGUGuuu cgag   c
uC        -               u    agu 

Annotation confidence Not enough data

Genome context

chr10: 145465911-145465976 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from zma-MIR395n

Mature zma-miR395n-5p

• Accession: MIMAT0015346
• Description: Zea mays zma-miR395n-5p mature miRNA
• Sequence: 2 - GUUCUCUACAAGCACUUCACGA - 23
• Evidence: experimental ; Illumina [1]

Mature zma-miR395n-3p

• Accession: MIMAT0014011
• Description: Zea mays zma-miR395n-3p mature miRNA
• Sequence: 45 - GUGAAGUGUUUGGGGGAACUC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716