Stem-loop sbi-MIR395g

Accession

MI0010891

Description

Sorghum bicolor sbi-MIR395g precursor miRNA

Literature search

4 open access papers mention sbi-MIR395g
(31 sentences)

Sequence

8443 reads, 377.0 reads per million, 49 experiments

GUUCCCUAAAAGCACUUCACGagaccuuggcuuaauaaagggcccuuGUGAAGUGUUUGGGGGAACUC
(((((((..((((((((((((((.....(((((......))))))))))))))))))).)))))))..

Structure

--       AA              accuu     aa 
  GUUCCCU  AAGCACUUCACGag     ggcuu  u
  |||||||  ||||||||||||||     |||||   
  CAAGGGG  UUUGUGAAGUGuuc     ccggg  a
CU       -G              -----     aa 

Annotation confidence High

Genome context

chr6: 57784324-57784391 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from sbi-MIR395g

Mature sbi-miR395g-5p

• Accession: MIMAT0056420
• Description: Sorghum bicolor sbi-miR395g-5p mature miRNA
• Sequence: 1 - GUUCCCUAAAAGCACUUCACG - 21
• Evidence: experimental ; unknown

Mature sbi-miR395g-3p

• Accession: MIMAT0011351
• Description: Sorghum bicolor sbi-miR395g-3p mature miRNA
• Sequence: 48 - GUGAAGUGUUUGGGGGAACUC - 68
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556