Stem-loop sbi-MIR5385

Accession

MI0018692

Description

Sorghum bicolor sbi-MIR5385 precursor miRNA

Literature search

2 open access papers mention sbi-MIR5385
(6 sentences)

Sequence

562 reads, 11.0 reads per million, 35 experiments

ggaguuuugcacgccgccgcuucucACCACCAACCCCACCGCUUCUCcgcgccgaggggcgagaAGCGGUGGUGUUGGUGGUGAGaagcagcggcguggcagauuugcag
(.((.((((((((((((.((((((((((((((((.((((((((((((.((.(....).)))))))))))))).)))))))))))))))).))))))).))))).)).)..

Structure

-- g  u     -       c                C            c  g c 
  g ag uuugc acgccgc gcuucucACCACCAAC CCACCGCUUCUC gc c g
  | || ||||| ||||||| |||||||||||||||| |||||||||||| || |  
  c uu agacg ugcggcg cgaaGAGUGGUGGUUG GGUGGCGAagag cg g a
ga g  u     g       a                U            -  g g 

Annotation confidence Medium

Genome context

chr6: 55351481-55351590 [+]

Mature sbi-miR5385-5p

• Accession: MIMAT0021683
• Description: Sorghum bicolor sbi-miR5385-5p mature miRNA
• Sequence: 26 - ACCACCAACCCCACCGCUUCUC - 47
• Evidence: experimental ; SOLiD [1]

Mature sbi-miR5385-3p

• Accession: MIMAT0056456
• Description: Sorghum bicolor sbi-miR5385-3p mature miRNA
• Sequence: 65 - AGCGGUGGUGUUGGUGGUGAG - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 21740560
   Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems
   Calviño M, Bruggmann R, Messing J
   BMC Genomics (2011) 12:356