Stem-loop sbi-MIR5381

Accession

MI0018688

Description

Sorghum bicolor sbi-MIR5381 precursor miRNA

Literature search

1 open access papers mention sbi-MIR5381
(1 sentences)

Sequence

4398 reads, 241.0 reads per million, 50 experiments

gcuuuaaaccaaagcucggcgcuaagaucucuggcuccgaccucggcgccAAGAUCUGUGGCGCCGAGCucgacgccaggccacauggcGCCUUGGUCAGCGCCCAGAUC
(((((.....)))))..((((((.((.((.........)).)).))))))..((((((.(((((.((.(..(.(((((.......))))).)..).)).)))))))))))

Structure

gcuuuaaaccaaagcucggcgcuaagaucucuggcuccgaccucggcgccAA      U     C  G uc a     gg 
                                                    GAUCUG GGCGC GA C  g cgcca  c
                                                    |||||| ||||| || |  | |||||  c
                                                    CUAGAC CCGCG CU G  C Gcggu  a
----------------------------------------------------      -     A  G UU C     ac 

Annotation confidence Low

Genome context

chr1: 562993-563102 [+]

Mature sbi-miR5381-5p

• Accession: MIMAT0021679
• Description: Sorghum bicolor sbi-miR5381-5p mature miRNA
• Sequence: 51 - AAGAUCUGUGGCGCCGAGC - 69
• Evidence: experimental ; SOLiD [1]

Mature sbi-miR5381-3p

• Accession: MIMAT0056453
• Description: Sorghum bicolor sbi-miR5381-3p mature miRNA
• Sequence: 90 - GCCUUGGUCAGCGCCCAGAUC - 110
• Evidence: experimental ; unknown

References

1. PubMed ID: 21740560
   Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems
   Calviño M, Bruggmann R, Messing J
   BMC Genomics (2011) 12:356