Stem-loop sbi-MIR169p

Accession

MI0013254

Description

Sorghum bicolor sbi-MIR169p precursor miRNA MIR169

Gene
family

RF03311; MIR169

Literature search

4 open access papers mention sbi-MIR169p
(23 sentences)

Sequence

11850 reads, 749.0 reads per million, 46 experiments

uUAGCCAAGAAUGGCUUGCCUAUCUccauuauuugguucaucagagggaccucugaucccucaugauggaugaaauguggaugaUGGCAGCCCUUCUGGCUAAGU
(((((((.(((.((((.(((.((((((((.((((.((((((((((((((.......)))))).)))))))).))))))))).)))))))))).))))))))))..

Structure

--       A   U    U   U   -     u    g        -      cc 
  uUAGCCA GAA GGCU GCC AUC Uccau auuu guucauca gaggga  u
  ||||||| ||| |||| ||| ||| ||||| |||| |||||||| ||||||  c
  AAUCGGU CUU CCGA CGG Uag aggug uaaa uagguagu cucccu  u
UG       -   C    -   -   u     -    g        a      ag 

Annotation confidence High

Genome context

chr8: 1349656-1349760 [+]

Mature sbi-miR169p-5p

• Accession: MIMAT0014043
• Description: Sorghum bicolor sbi-miR169p-5p mature miRNA
• Sequence: 2 - UAGCCAAGAAUGGCUUGCCUAUCU - 25
• Evidence: not_experimental

Mature sbi-miR169p-3p

• Accession: MIMAT0056448
• Description: Sorghum bicolor sbi-miR169p-3p mature miRNA
• Sequence: 85 - UGGCAGCCCUUCUGGCUAAGU - 105
• Evidence: experimental ; unknown

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716