Stem-loop sbi-MIR395j

Accession

MI0010894

Description

Sorghum bicolor sbi-MIR395j precursor miRNA

Literature search

4 open access papers mention sbi-MIR395j
(31 sentences)

Sequence

9461 reads, 406.0 reads per million, 49 experiments

GUUCCCUUCAAGCACUUCACAUGaagcucuuugcauuauauuggcggauguagcauugagaccaauGUGAAGUGUUUGGGGGAACUC
(((((((.((((((((((((((....(((..(((..((((((....)))))))))..)))....)))))))))))))))))))))..

Structure

--       U              Gaag   uu   au      g 
  GUUCCCU CAAGCACUUCACAU    cuc  ugc  uauauu g
  ||||||| ||||||||||||||    |||  |||  ||||||  
  CAAGGGG GUUUGUGAAGUGua    gag  acg  auguag c
CU       -              acca   uu   --      g 

Annotation confidence High

Genome context

chr7: 4623545-4623631 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from sbi-MIR395j

Mature sbi-miR395j-5p

• Accession: MIMAT0056423
• Description: Sorghum bicolor sbi-miR395j-5p mature miRNA
• Sequence: 1 - GUUCCCUUCAAGCACUUCACAUG - 23
• Evidence: experimental ; unknown

Mature sbi-miR395j-3p

• Accession: MIMAT0011354
• Description: Sorghum bicolor sbi-miR395j-3p mature miRNA
• Sequence: 67 - GUGAAGUGUUUGGGGGAACUC - 87
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556