Stem-loop sbi-MIR169l

Accession

MI0010877

Description

Sorghum bicolor sbi-MIR169l precursor miRNA

Literature search

6 open access papers mention sbi-MIR169l
(32 sentences)

Sequence

30241 reads, 1724.0 reads per million, 50 experiments

ugaUAGCCAAGGAUGACUUGCCUGUGuccuuugugccgaaggaucagaaaugugagccuuugagauagaugguucauaGGCAGUCUCCUUGGCUAGC
...((((((((((.((((.(((((((.(((((((..((((((.(((......))).))))))..))))).))..)))))))))))))))))))))..

Structure

uga          U    U       -u  -     gc      a   ga 
   UAGCCAAGGA GACU GCCUGUG  cc uuugu  cgaagg uca  a
   |||||||||| |||| |||||||  || |||||  |||||| |||   
   AUCGGUUCCU CUGA CGGauac  gg agaua  guuucc agu  a
-CG          -    -       uu  u     ga      g   gu 

Annotation confidence High

Comments

This sequence is antisense to that predicted in [1], but is more conserved with the majority of the family (Zhang L, Ware D, pers. comm.).

Genome context

chr7: 62246903-62246999 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from sbi-MIR169l

Mature sbi-miR169l-5p

• Accession: MIMAT0011337
• Description: Sorghum bicolor sbi-miR169l-5p mature miRNA
• Sequence: 4 - UAGCCAAGGAUGACUUGCCUGUG - 26
• Evidence: not_experimental

Mature sbi-miR169l-3p

• Accession: MIMAT0056408
• Description: Sorghum bicolor sbi-miR169l-3p mature miRNA
• Sequence: 79 - GGCAGUCUCCUUGGCUAGC - 97
• Evidence: experimental ; unknown

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556