Stem-loop zma-MIR169h

Accession

MI0001829

Description

Zea mays zma-MIR169h precursor miRNA

Literature search

32 open access papers mention zma-MIR169h
(215 sentences)

Sequence

2828 reads, 5211.0 reads per million, 110 experiments

caauaagggccugccucugaUAGCCAAGGAUGACUUGCCUAuguccuuuguuuacaaaggaucagaauuguggaccuuuguguugguuCGUAGGCAGUCUCCUUGGCUAGCcugaguggccccuauug
(((((.(((((...(((...((((((((((.((((.(((((((..((.....((((((((.(((......))).))))))))..))..)))))))))))))))))))))....))).))))).)))))

Structure

     a     ugc   -uga          U    U       uc  uuguu        a   ga 
caaua gggcc   cuc    UAGCCAAGGA GACU GCCUAug  cu     uacaaagg uca  a
||||| |||||   |||    |||||||||| |||| |||||||  ||     |||||||| |||   
guuau cccgg   gag    AUCGGUUCCU CUGA CGGAUGC  gg     guguuucc ggu  u
     c     --u   ucCG          -    -       uu  ---uu        a   gu 

Annotation confidence Medium

Genome context

4: 49933022-49933149 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR169h

Mature zma-miR169h-5p

• Accession: MIMAT0001731
• Description: Zea mays zma-miR169h-5p mature miRNA
• Sequence: 21 - UAGCCAAGGAUGACUUGCCUA - 41
• Evidence: not_experimental

Mature zma-miR169h-3p

• Accession: MIMAT0056566
• Description: Zea mays zma-miR169h-3p mature miRNA
• Sequence: 89 - CGUAGGCAGUCUCCUUGGCUAGC - 111
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13