Stem-loop sbi-MIR169b

Accession

MI0001515

Description

Sorghum bicolor sbi-MIR169b precursor miRNA

Literature search

5 open access papers mention sbi-MIR169b
(26 sentences)

Sequence

20982 reads, 447.0 reads per million, 50 experiments

CAGCCAAGGAUGACUUGCCGGauaugugcaugcauauguuacaaggcagcauaugcacccuguuacaagccugccuguucuccGGCAAGUUGUCCUUGGCUA
.(((((((((((((((((((((.(((.(((.((...(((.(((.((..((....))..))))).))).)).))).)))..))))))))))))))))))))).

Structure

C                     -u   u   u  aua   u   a  ca  a 
 AGCCAAGGAUGACUUGCCGGa  aug gca gc   ugu aca gg  gc u
 |||||||||||||||||||||  ||| ||| ||   ||| ||| ||  ||  
 UCGGUUCCUGUUGAACGGccu  ugu cgu cg   aca ugu cc  cg a
A                     cu   c   c  --a   u   -  ca  u 

Annotation confidence High

Genome context

chr10: 56120427-56120528 [-]

Mature sbi-miR169b-5p

• Accession: MIMAT0001409
• Description: Sorghum bicolor sbi-miR169b-5p mature miRNA
• Sequence: 1 - CAGCCAAGGAUGACUUGCCGG - 21
• Evidence: not_experimental

Mature sbi-miR169b-3p

• Accession: MIMAT0056349
• Description: Sorghum bicolor sbi-miR169b-3p mature miRNA
• Sequence: 84 - GGCAAGUUGUCCUUGGCUA - 102
• Evidence: experimental ; unknown

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13