Stem-loop sbi-MIR160d

Accession

MI0001507

Description

Sorghum bicolor sbi-MIR160d precursor miRNA

Literature search

3 open access papers mention sbi-MIR160d
(11 sentences)

Sequence

197532 reads, 11930.0 reads per million, 50 experiments

UGCCUGGCUCCCUGUAUGCCAcucgcuuagcugccaacaacucauacuacguuguuaacgacguuggcucuacugcggaugGCGUGCGAGGAGCCAAGCA
(((.(((((((.(((((((((.((((.(((..((((((..(....((......))....)..)))))).)))..)))).))))))))).))))))).)))

Structure

   C       C         c    -u   cu      aa ucau  ua 
UGC UGGCUCC UGUAUGCCA ucgc  uag  gccaac  c    ac  c
||| ||||||| ||||||||| ||||  |||  ||||||  |    ||   
ACG ACCGAGG GCGUGCGgu ggcg  auc  cgguug  g    ug  g
   A       A         a    uc   -u      ca caau  uu 

Annotation confidence High

Genome context

chr1: 5218433-5218532 [-]

Mature sbi-miR160d-5p

• Accession: MIMAT0001401
• Description: Sorghum bicolor sbi-miR160d-5p mature miRNA
• Sequence: 1 - UGCCUGGCUCCCUGUAUGCCA - 21
• Evidence: not_experimental

Mature sbi-miR160d-3p

• Accession: MIMAT0056341
• Description: Sorghum bicolor sbi-miR160d-3p mature miRNA
• Sequence: 82 - GCGUGCGAGGAGCCAAGCA - 100
• Evidence: experimental ; unknown

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13