Stem-loop zma-MIR169i

Accession

MI0001830

Description

Zea mays zma-MIR169i precursor miRNA

Literature search

31 open access papers mention zma-MIR169i
(242 sentences)

Sequence

302 reads, 665 reads per million, 7 experiments

gaugagagugguagcucuggUAGCCAAGGAUGACUUGCCUGugugcuggccacgcuccccucaugcaaggaccaucucgugucgaccgacgagcgagcgagcgaucgaucgaugagaggaugacgaagcuugggguguacguuggucucucacgGGCAGUCUCCUUGGCUAGcccugacucacucuuaccg
(.((((((((..((.((.((((((((((((.((((.(((((((.(..(((((((..(.(((((.((......((((((.((((((.(((...((......))..))).)))))).)).)))).....)).))))).)..)).))))).).)))))))))))))))))))).)))..)))))))))))).).

Structure

- a        gu  c  -u   -         U    U       u cu     -  cu c     u  aaggac    -  g      c   cga  ga 
 g ugagagug  ag uc  ggU AGCCAAGGA GACU GCCUGug g  ggcca cg  c ccuca gc      cauc uc ugucga cga   gc  g
 | ||||||||  || ||  ||| ||||||||| |||| ||||||| |  ||||| ||  | ||||| ||      |||| || |||||| |||   ||   
 c auucucac  uc ag  ccG UCGGUUCCU CUGA CGGgcac c  cuggu gc  g ggggu cg      guag ag guagcu gcu   cg  c
g c        --  -  uc   A         -    -       u -u     u  au u     u  -aagca    g  a      a   -ag  ag 

Annotation confidence Low

Genome context

chr4: 49299338-49299528 [+]

Mature zma-miR169i-5p

• Accession: MIMAT0001732
• Description: Zea mays zma-miR169i-5p mature miRNA
• Sequence: 21 - UAGCCAAGGAUGACUUGCCUG - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR169i-3p

• Accession: MIMAT0015195
• Description: Zea mays zma-miR169i-3p mature miRNA
• Sequence: 155 - GGCAGUCUCCUUGGCUAG - 172
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13