Stem-loop sbi-MIR169m

Accession

MI0010878

Description

Sorghum bicolor sbi-MIR169m precursor miRNA

Literature search

5 open access papers mention sbi-MIR169m
(26 sentences)

Sequence

23373 reads, 1220.0 reads per million, 50 experiments

UAGCCAAGGAUGACUUGCCUAUauccucucuaaaggaucagcaaauauugaggcuucuaguggucucauaugGGCAGUCUCCUUGGCUAGCC
((((((((((.((((.(((((((((((......))))...........(((((((......))))))))))))))))))))))))))))...

Structure

---          U    U       uccucucuaaaggaucagcaaauau       uc 
   UAGCCAAGGA GACU GCCUAUa                         ugaggcu  u
   |||||||||| |||| |||||||                         |||||||   
   AUCGGUUCCU CUGA CGGguau                         acucugg  a
CCG          -    -       -------------------------       ug 

Annotation confidence High

Genome context

chr7: 62252290-62252381 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from sbi-MIR169m

Mature sbi-miR169m-5p

• Accession: MIMAT0011338
• Description: Sorghum bicolor sbi-miR169m-5p mature miRNA
• Sequence: 1 - UAGCCAAGGAUGACUUGCCUAU - 22
• Evidence: not_experimental

Mature sbi-miR169m-3p

• Accession: MIMAT0056409
• Description: Sorghum bicolor sbi-miR169m-3p mature miRNA
• Sequence: 73 - GGCAGUCUCCUUGGCUAGCC - 92
• Evidence: experimental ; unknown

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556