Stem-loop sbi-MIR160b

Accession

MI0001510

Description

Sorghum bicolor sbi-MIR160b precursor miRNA

Literature search

3 open access papers mention sbi-MIR160b
(12 sentences)

Sequence

204301 reads, 11988.0 reads per million, 50 experiments

UGCCUGGCUCCCUGUAUGCCAcacauguagcccaacccguggcgugauuggaugcugugggugGCGUGCAAGGAGCCAAGCA
(((.(((((((.((((((((((.((((((..((((.(((...)).).)))).))).))).)))))))))).))))))).)))

Structure

   C       C          a   -   gc    c -  u 
UGC UGGCUCC UGUAUGCCAc cau gua  ccaa c cg  
||| ||||||| |||||||||| ||| |||  |||| | || g
ACG ACCGAGG ACGUGCGgug gug cgu  gguu g gc  
   A       A          g   u   -a    a u  g 

Annotation confidence High

Genome context

chr10: 57093822-57093903 [+]

Mature sbi-miR160b-5p

• Accession: MIMAT0001404
• Description: Sorghum bicolor sbi-miR160b-5p mature miRNA
• Sequence: 1 - UGCCUGGCUCCCUGUAUGCCA - 21
• Evidence: not_experimental

Mature sbi-miR160b-3p

• Accession: MIMAT0056344
• Description: Sorghum bicolor sbi-miR160b-3p mature miRNA
• Sequence: 64 - GCGUGCAAGGAGCCAAGCA - 82
• Evidence: experimental ; unknown

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13