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High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families |
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|---|---|
| PubMed ID | 19068109 |
| Authors | Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T |
| Journal | BMC Genomics |
| Volume | 9 |
| Pages | 593 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| mtr-MIR2086 | MI0010539 | None | chr2 | 31686255 | 31686356 | - | - |
| mtr-MIR1510b | MI0010540 | None | chr5 | 18612353 | 18612588 | + | - |
| mtr-MIR1507 | MI0010541 | None | chr4 | 46264970 | 46265113 | + | - |
| mtr-MIR1510a | MI0010542 | None | chr5 | 18616293 | 18616456 | + | - |
| mtr-MIR1509a | MI0010543 | None | chr7 | 36253579 | 36253832 | + | - |
| mtr-MIR2087 | MI0010544 | None | chr2 | 13519918 | 13520182 | - | - |
| mtr-MIR2088 | MI0010545 | None | chr8 | 15599389 | 15599534 | - | - |
| mtr-MIR2089 | MI0010546 | None | chr5 | 18629430 | 18629592 | + | - |
| mtr-MIR160a | MI0001739 | None | contig_112492 | 316 | 434 | + | - |
| mtr-MIR169a | MI0001741 | None | contig_79842 | 860 | 980 | + | - |
| mtr-MIR393a | MI0001745 | None | chr3 | 21952259 | 21952393 | + | - |
| mtr-MIR395a | MI0001746 | None | chr5 | 16610555 | 16610689 | - | - |
| mtr-MIR395b | MI0001747 | None | chr5 | 16653454 | 16653577 | - | - |
| mtr-MIR156a | MI0001752 | None | contig_50145 | 402 | 861 | - | - |
| mtr-MIR171a | MI0001753 | None | contig_164461 | 1012 | 1125 | - | - |
| mtr-MIR395c | MI0005070 | None | chr5 | 16622264 | 16622360 | - | - |
| mtr-MIR395d | MI0005071 | None | chr5 | 16616400 | 16616494 | - | - |
| mtr-MIR395e | MI0005072 | None | chr5 | 16605860 | 16605959 | - | - |
| mtr-MIR395f | MI0005073 | None | chr5 | 16598925 | 16599022 | - | - |
| mtr-MIR395g | MI0005074 | None | chr5 | 16636838 | 16636900 | - | - |
| mtr-MIR395h | MI0005075 | None | chr5 | 16641990 | 16642090 | - | - |
| mtr-MIR395i | MI0005076 | None | chr5 | 16656267 | 16656342 | - | - |
| mtr-MIR395j | MI0005077 | None | chr5 | 16671143 | 16671218 | - | - |
| mtr-MIR395l | MI0005079 | None | chr5 | 16568508 | 16568608 | - | - |
| mtr-MIR395m | MI0005080 | None | chr5 | 16576530 | 16576629 | - | - |
| mtr-MIR395n | MI0005081 | None | chr5 | 16591743 | 16591843 | - | - |
| mtr-MIR395o | MI0005082 | None | chr5 | 16556404 | 16556486 | - | - |
| mtr-MIR395k | MI0005083 | None | None | None | - | ||
| mtr-MIR156b | MI0005571 | None | chr1 | 4445878 | 4445972 | - | - |
| mtr-MIR160b | MI0005574 | None | chr1 | 27239019 | 27239109 | + | - |
| mtr-MIR160c | MI0005576 | None | chr2 | 9007365 | 9007456 | - | - |
| mtr-MIR169c | MI0005577 | None | chr2 | 13450873 | 13450957 | + | - |
| mtr-MIR169d | MI0005578 | None | chr2 | 13468364 | 13468603 | + | - |
| mtr-MIR169e | MI0005579 | None | chr2 | 13473516 | 13473616 | + | - |
| mtr-MIR171b | MI0005580 | None | chr2 | 27393335 | 27393428 | + | - |
| mtr-MIR169f | MI0005583 | None | chr3 | 34270912 | 34271050 | + | - |
| mtr-MIR156c | MI0005584 | None | chr3 | 36762577 | 36762674 | + | - |
| mtr-MIR156d | MI0005585 | None | chr3 | 37487558 | 37487647 | - | - |
| mtr-MIR156e | MI0005595 | None | chr8 | 31820126 | 31820297 | + | - |
| mtr-MIR171c | MI0005597 | None | chr5 | 8935780 | 8935884 | + | - |
| mtr-MIR172a | MI0005600 | None | chr5 | 33265814 | 33265926 | - | - |
| mtr-MIR393b | MI0005601 | None | chr5 | 33945918 | 33946036 | + | - |
| mtr-MIR168a | MI0005603 | None | chr5 | 41779400 | 41779497 | - | - |
| mtr-MIR169g | MI0005604 | None | chr6 | 3029966 | 3030176 | + | - |
| mtr-MIR156f | MI0005605 | None | chr6 | 4845679 | 4845772 | - | - |
| mtr-MIR156g | MI0005607 | None | chr6 | 18847298 | 18847417 | - | - |
| mtr-MIR156h | MI0005613 | None | chr7 | 24257584 | 24257677 | + | - |
| mtr-MIR160d | MI0005615 | None | chr7 | 32017510 | 32017600 | - | - |
| mtr-MIR171d | MI0005619 | None | chr8 | 20063684 | 20063788 | - | - |
| mtr-MIR171e | MI0005620 | None | chr4 | 39704652 | 39704744 | + | - |
| mtr-MIR169h | MI0005623 | None | chr4 | 44360866 | 44360951 | - | - |
| mtr-MIR169b | MI0005625 | None | None | None | - | ||
| mtr-MIR156i | MI0005626 | None | chr4 | 46126859 | 46126951 | - | - |
| mtr-MIR171f | MI0005627 | None | chr4 | 46694027 | 46694121 | - | - |
| mtr-MIR160e | MI0005629 | None | chr1 | 27301457 | 27301547 | - | - |
| mtr-MIR169k | MI0011795 | None | None | None | - | ||
| mtr-MIR169j | MI0011868 | None | chr2 | 13454079 | 13454208 | + | - |
| mtr-MIR172b | MI0018368 | None | AC235487.1 | 197953 | 198066 | + | - |
| mtr-MIR172c | MI0018369 | None | AC233663.2 | 10169 | 10307 | + | - |
| mtr-MIR160f | MI0018371 | None | AC233669.2 | 28227 | 28330 | - | - |
| mtr-MIR171h | MI0018372 | None | chr3 | 31404708 | 31404816 | - | - |
| mtr-MIR168b | MI0018373 | None | chr5 | 41975236 | 41975333 | + | - |
| mtr-MIR156j | MI0018375 | None | chr1 | 3468974 | 3469076 | + | - |
| mtr-MIR168c | MI0019093 | None | chr5 | 10278669 | 10278794 | + | - |
| mtr-MIR171g | MI0019677 | None | None | None | - | ||
| mtr-MIR169i | MI0025203 | None | None | None | - | ||
| mtr-MIR172d | MI0025218 | None | contig_53419 | 1969 | 2086 | + | - |
| mtr-MIR169l | MI0025230 | None | None | None | - |