Stem-loop mtr-MIR160b

Accession

MI0005574

Description

Medicago truncatula mtr-MIR160b precursor miRNA

Literature search

7 open access papers mention mtr-MIR160b
(18 sentences)

Sequence

77377 reads, 783.0 reads per million, 111 experiments

guaugUGCCUGGCUCCCUGUAUGCCAuauaugaagcucauugaaaaaucaaugaccuuuguggaugGCGUAUGAGGAGCCAAGCAUAuucc
..((((((.(((((((.((((((((((.(((((((.(((((((....))))))).))))))).)))))))))).))))))).))))))...

Structure

-gu      C       C          a       c       a 
   augUGC UGGCUCC UGUAUGCCAu uaugaag ucauuga a
   |||||| ||||||| |||||||||| ||||||| |||||||  
   uAUACG ACCGAGG GUAUGCGgua guguuuc aguaacu a
ccu      A       A          g       c       a 

Annotation confidence High

Genome context

chr1: 27239019-27239109 [+]

Mature mtr-miR160b-5p

• Accession: MIMAT0011060
• Description: Medicago truncatula mtr-miR160b-5p mature miRNA
• Sequence: 6 - UGCCUGGCUCCCUGUAUGCCA - 26
• Evidence: experimental ; 454 [2], Northern [2]

Mature mtr-miR160b-3p

• Accession: MIMAT0054761
• Description: Medicago truncatula mtr-miR160b-3p mature miRNA
• Sequence: 67 - GCGUAUGAGGAGCCAAGCAUA - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None: