Stem-loop mtr-MIR2088

Accession

MI0010545

Description

Medicago truncatula mtr-MIR2088 precursor miRNA

Sequence

313993 reads, 1912.0 reads per million, 111 experiments

ucucuguaucucgaaguagacggcggcuuaaccgauguAGGCCUAGAUUACAUUGGACAAaacaguccaaacuugagaugguuacuucuuggUCCAAUGUAAUCUAGGUCUACaucuguuaagucucuaaaguauucugaaagaga
(((((...((..(((......((.((((((((.(((((((((((((((((((((((((.....(((...((((......))))))).....))))))))))))))))))))))))).)))))))).))......))).)).)))))

Structure

     gua  uc   guagac  c        c                         AAaac   cca    ug 
ucucu   uc  gaa      gg ggcuuaac gauguAGGCCUAGAUUACAUUGGAC     agu   aacu  a
|||||   ||  |||      || |||||||| |||||||||||||||||||||||||     |||   ||||   
agaga   ag  cuu      uc cugaauug cuaCAUCUGGAUCUAAUGUAACCUg     uca   uugg  g
     --a  -u   augaaa  u        u                         guucu   ---    ua 

Annotation confidence High

Genome context

chr8: 15599389-15599534 [-]

Mature mtr-miR2088-5p

• Accession: MIMAT0010038
• Description: Medicago truncatula mtr-miR2088-5p mature miRNA
• Sequence: 39 - AGGCCUAGAUUACAUUGGACAA - 60
• Evidence: experimental ; Illumina [1,3], Northern [1], 454 [2]

Mature mtr-miR2088-3p

• Accession: MIMAT0010039
• Description: Medicago truncatula mtr-miR2088-3p mature miRNA
• Sequence: 93 - UCCAAUGUAAUCUAGGUCUAC - 113
• Evidence: experimental ; Illumina [1,3], Northern [1], 454 [2]

References

1. PubMed ID: 19068109
   High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
   Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T
   BMC Genomics (2008) 9:593


2. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796


3. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105