Stem-loop mtr-MIR169a

Accession

MI0001741

Description

Medicago truncatula mtr-MIR169a precursor miRNA

Literature search

13 open access papers mention mtr-MIR169a
(54 sentences)

Sequence

5172 reads, 87.0 reads per million, 109 experiments

aagaggcagagagaguaaugCAGCCAAGGAUGACUUGCCGAcaacauuggcgaauguucaugugauuucugccucauugugccGGCAAGUUGUCCUUGGCUAUguuagucucucaucuucu
.(((((..((((((.(((((.(((((((((((((((((((.((.((..((((((...((....)).))).)))....)))).))))))))))))))))))).))))).))))))..)))))

Structure

a     ca      g     C                   A  a  --uu   -   ugu  a 
 agagg  gagaga uaaug AGCCAAGGAUGACUUGCCG ca ca    ggc gaa   uc u
 |||||  |||||| ||||| ||||||||||||||||||| || ||    ||| |||   ||  
 ucuuc  cucucu auugU UCGGUUCCUGUUGAACGGc gu gu    ccg cuu   ag g
-     ua      g     A                   c  -  uacu   u   --u  u 

Annotation confidence High

Genome context

contig_79842: 860-980 [+]

Mature mtr-miR169a-5p

• Accession: MIMAT0001643
• Description: Medicago truncatula mtr-miR169a-5p mature miRNA
• Sequence: 21 - CAGCCAAGGAUGACUUGCCGA - 41
• Evidence: not_experimental

Mature mtr-miR169a-3p

• Accession: MIMAT0054741
• Description: Medicago truncatula mtr-miR169a-3p mature miRNA
• Sequence: 84 - GGCAAGUUGUCCUUGGCUAU - 103
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98