miRBase entry: mtr-MIR160d

Stem-loop mtr-MIR160d


Accession
MI0005615
Description
Medicago truncatula mtr-MIR160d precursor miRNA

Literature search
5 open access papers mention mtr-MIR160d
(16 sentences)

Sequence

uagugUGCCUGGCUCCCUGUAUGCCAuuuguagaguccaucacgacagugaugaacuuagugaauggcguacucggagucaugcaugcugu
((((((((.(((((((..((((((((((((..((((.((((((....)))))).))))..))))))))))))..))))))).)))))))).

Structure
-        C       CU            ua    c      g 
 uagugUGC UGGCUCC  GUAUGCCAuuug  gagu caucac a
 |||||||| |||||||  ||||||||||||  |||| ||||||  
 gucguacg acugagg  caugcgguaagu  uuca guagug c
u        u       cu            ga    a      a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr7: 32017510-32017600 [-]

Database links

Mature mtr-miR160d

Accession MIMAT0011101
Description Medicago truncatula mtr-miR160d mature miRNA
Sequence 6 - UGCCUGGCUCCCUGUAUGCCA - 26
Evidence experimental
454 [2], Northern [2]

References

  1. PubMed ID: 19555436
    Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
    "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
    "New Phytol (2009) 184:85-98


  2. "Bonnet E"
    (2007) None: