Stem-loop mtr-MIR168a

Accession

MI0005603

Description

Medicago truncatula mtr-MIR168a precursor miRNA

Literature search

7 open access papers mention mtr-MIR168a
(25 sentences)

Sequence

297 reads, 4.0 reads per million, 88 experiments

cugaUUUGCUUGGUGCUGGUCGGGAACCAuuacauccacaguuuccguagaaacuuucccuuaguaaAUUGGACCCCGUCUUGCAUCAAUCgaaucag
((((((((.(((((((.((.((((..(((((((......((((((....))))))........))))..)))..)))).)).))))))).))))))))

Structure

        C       U  U    AA   --    --auccac      c 
cugaUUUG UUGGUGC GG CGGG  CCA  uuac        aguuuc g
|||||||| ||||||| || ||||  |||  ||||        ||||||  
gacuaagC AACUACG UC GCCC  GGU  aaug        ucaaag u
        U       U  U    CA   UA    auucccuu      a 

Annotation confidence Low

Genome context

chr5: 41779400-41779497 [-]

Mature mtr-miR168a-5p

• Accession: MIMAT0011089
• Description: Medicago truncatula mtr-miR168a-5p mature miRNA
• Sequence: 5 - UUUGCUUGGUGCUGGUCGGGAACCA - 29
• Evidence: experimental ; 454 [2], Northern [2]

Mature mtr-miR168a-3p

• Accession: MIMAT0054775
• Description: Medicago truncatula mtr-miR168a-3p mature miRNA
• Sequence: 68 - AUUGGACCCCGUCUUGCAUCAAUC - 91
• Evidence: experimental ; unknown

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None: