Stem-loop mtr-MIR393a

Accession

MI0001745

Description

Medicago truncatula mtr-MIR393a precursor miRNA

Literature search

6 open access papers mention mtr-MIR393a
(11 sentences)

Sequence

3952 reads, 35.0 reads per million, 111 experiments

aacugcaacuugaggaggcaUCCAAAGGGAUCGCAUUGAUCcuauaauauuucaacuuuagucacuuuaauuuucucucauauaauacuuaauugggAUCAUGCCAUCCCUUUGGAUUucuccuuuaguagcuac
....((.(((.(((((((.((((((((((((.((((.(((((((.................................................))))))))))).)))))))))))).))))))).))).))...

Structure

aacu  a   u       c            C    U       uaauauuucaacuuuagucacuu 
    gc acu gaggagg aUCCAAAGGGAU GCAU GAUCcua                       u
    || ||| ||||||| |||||||||||| |||| |||||||                       a
    cg uga uuccucu UAGGUUUCCCUA CGUA CUAgggu                       a
-cau  a   u       U            C    -       uaauucauaauauacucucuuuu 

Annotation confidence High

Genome context

chr3: 21952259-21952393 [+]

Mature mtr-miR393a-5p

• Accession: MIMAT0001647
• Description: Medicago truncatula mtr-miR393a-5p mature miRNA
• Sequence: 21 - UCCAAAGGGAUCGCAUUGAUC - 41
• Evidence: experimental ; Northern [2]

Mature mtr-miR393a-3p

• Accession: MIMAT0054744
• Description: Medicago truncatula mtr-miR393a-3p mature miRNA
• Sequence: 98 - AUCAUGCCAUCCCUUUGGAUU - 118
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98