Stem-loop mtr-MIR172d

Accession

MI0025218

Description

Medicago truncatula mtr-MIR172d precursor miRNA

Literature search

8 open access papers mention mtr-MIR172d
(34 sentences)

Sequence

477392 reads, 6540.0 reads per million, 111 experiments

agucaguguuugcuaguGGAGCAUCAUCAAGAUUCACAagcuuuauagggcuucaaaucaauuagcccuucuucauguuaugAGAAUCUUGAUGAUGCUGCAGcagcaauugaugacu
(((((....(((((..((.((((((((((((((((.(((((.....((((((...........)))))).......))).)).)))))))))))))))).))..)))))....)))))

Structure

     gugu     ag  G                A  -   --uuuau      ucaa 
aguca    uugcu  uG AGCAUCAUCAAGAUUC CA agc       agggcu    a
|||||    |||||  || |||||||||||||||| || |||       ||||||    u
ucagu    aacga  AC UCGUAGUAGUUCUAAG gu uug       ucccga    c
     aguu     cG  G                A  a   uacuucu      uuaa 

Annotation confidence High

Genome context

contig_53419: 1969-2086 [+]

Mature mtr-miR172d-5p

• Accession: MIMAT0029978
• Description: Medicago truncatula mtr-miR172d-5p mature miRNA
• Sequence: 18 - GGAGCAUCAUCAAGAUUCACA - 38
• Evidence: experimental ; Illumina [1]

Mature mtr-miR172d-3p

• Accession: MIMAT0029979
• Description: Medicago truncatula mtr-miR172d-3p mature miRNA
• Sequence: 83 - AGAAUCUUGAUGAUGCUGCAG - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105