Stem-loop mtr-MIR160a

Accession

MI0001739

Description

Medicago truncatula mtr-MIR160a precursor miRNA

Literature search

6 open access papers mention mtr-MIR160a
(18 sentences)

Sequence

63102 reads, 563.0 reads per million, 111 experiments

agauauauauacuaauugcgUGCCUGGCUCCCUGUAUGCCAuuuguagaguucaucaagauguugaugacuuuaaugaaugGCGUGCGAGGAGCCAUGCAUGuuguguauauuuucuau
(((.((((((((.....((((((.(((((((.(((((((((((((((((((.((((((....))))))))))).)))))))))))))).))))))).)))))).))))))))..)))..

Structure

--   -u        uaauu      C       C              -     u      g 
  aga  auauauac     gcgUGC UGGCUCC UGUAUGCCAuuugu agagu caucaa a
  |||  ||||||||     |||||| ||||||| |||||||||||||| ||||| ||||||  
  ucu  uauaugug     uGUACG ACCGAGG GCGUGCGguaagua uuuca guaguu u
ua   uu        ----u      U       A              a     -      g 

Annotation confidence High

Genome context

contig_112492: 316-434 [+]

Mature mtr-miR160a-5p

• Accession: MIMAT0001641
• Description: Medicago truncatula mtr-miR160a-5p mature miRNA
• Sequence: 21 - UGCCUGGCUCCCUGUAUGCCA - 41
• Evidence: experimental ; 454 [2], Northern [2]

Mature mtr-miR160a-3p

• Accession: MIMAT0054739
• Description: Medicago truncatula mtr-miR160a-3p mature miRNA
• Sequence: 82 - GCGUGCGAGGAGCCAUGCAUG - 102
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98