miRBase entry: mtr-MIR171d

Stem-loop mtr-MIR171d


Accession
MI0005619
Description
Medicago truncatula mtr-MIR171d precursor miRNA

Literature search
8 open access papers mention mtr-MIR171d
(53 sentences)

Sequence

aaugagauauuggccugguucacucagaccaagugauaaaccacuaagauacaguauuguacuugugugguuuuggguuUGAUUGAGCCGUGCCAAUAUCucacu
..((((((((((((.(((((((.(((((((.......(((((((((((.((((....)))))))).)))))))..))))))).))))))).))))))))))))..

Structure
aa            c       c       aagugau       -    a    g 
  ugagauauuggc ugguuca ucagacc       aaaccac uaag uaca u
  |||||||||||| ||||||| |||||||       ||||||| |||| ||||  
  acuCUAUAACCG GCCGAGU AGUuugg       uuuggug guuc augu a
uc            U       U       -----gu       u    -    u 


Annotation confidence Not enough data
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Genome context
chr8: 20063684-20063788 [-]

Database links

Mature mtr-miR171d

Accession MIMAT0011105
Description Medicago truncatula mtr-miR171d mature miRNA
Sequence 80 - UGAUUGAGCCGUGCCAAUAUC - 100
Evidence experimental
454 [2], Northern [2]

References

  1. PubMed ID: 19555436
    Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
    "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
    "New Phytol (2009) 184:85-98


  2. "Bonnet E"
    (2007) None: