Stem-loop mtr-MIR171a

Accession

MI0001753

Description

Medicago truncatula mtr-MIR171a precursor miRNA

Literature search

9 open access papers mention mtr-MIR171a
(54 sentences)

Sequence

11253 reads, 70.0 reads per million, 111 experiments

ugaauuccccuccgcuuuuugaUGUUGGCUUGUCUCAAUCAAAucaaaguucuugaaauuugaguucuuuagucUGAUUGAGUCGUGCCAAUAUCauauuaagcgauaaaaguc
............(((((..((((((((((.((.((((((((.((.((((..(((((...)))))..)))).)).)))))))).)).))))))))))....))))).........

Structure

ugaauuccccuc     --uu          U  U        A  c    uu     a 
            cgcuu    ugaUGUUGGC UG CUCAAUCA Au aaag  cuuga  
            |||||    |||||||||| || |||||||| || ||||  ||||| a
            gcgaa    aCUAUAACCG GC GAGUUAGU ug uuuc  gaguu  
---cugaaaaua     uuau          U  U        c  a    uu     u 

Annotation confidence High

Genome context

contig_164461: 1012-1125 [-]

Mature mtr-miR171a-5p

• Accession: MIMAT0054747
• Description: Medicago truncatula mtr-miR171a-5p mature miRNA
• Sequence: 23 - UGUUGGCUUGUCUCAAUCAAA - 43
• Evidence: experimental ; unknown

Mature mtr-miR171a-3p

• Accession: MIMAT0001655
• Description: Medicago truncatula mtr-miR171a-3p mature miRNA
• Sequence: 75 - UGAUUGAGUCGUGCCAAUAUC - 95
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13