Stem-loop mtr-MIR395b

Accession

MI0001747

Description

Medicago truncatula mtr-MIR395b precursor miRNA

Literature search

5 open access papers mention mtr-MIR395b
(12 sentences)

Sequence

3898 reads, 54.0 reads per million, 102 experiments

uacuuguugauuuucucuuggAGUUCCUCUGAAUGCUUCAAAcaugagacaaucuugauagaaauuauggauaguucuuguucaAUGAAGUAUUUGGGGGAACUCuuggaauugaaucaacaua
....(((((((((..(((.(((((((((((((((((((((((((.(((.(.((((((((....)))).)))).)))).))))...))))))))))))))))))))).)))...)))))))))..

Structure

uacu         -uc   u                     ---    u   a a    -    a 
    uguugauuu   ucu ggAGUUCCUCUGAAUGCUUCA   AAca gag c aucu ugau g
    |||||||||   ||| |||||||||||||||||||||   |||| ||| | |||| ||||  
    acaacuaag   agg uCUCAAGGGGGUUUAUGAAGU   uugu cuu g uagg auua a
--au         uua   u                     Aac    u   - a    u    a 

Annotation confidence High

Genome context

chr5: 16653454-16653577 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR395b

Mature mtr-miR395b-5p

• Accession: MIMAT0054746
• Description: Medicago truncatula mtr-miR395b-5p mature miRNA
• Sequence: 22 - AGUUCCUCUGAAUGCUUCAAA - 42
• Evidence: experimental ; unknown

Mature mtr-miR395b-3p

• Accession: MIMAT0001649
• Description: Medicago truncatula mtr-miR395b-3p mature miRNA
• Sequence: 85 - AUGAAGUAUUUGGGGGAACUC - 105
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13