Stem-loop mtr-MIR156e

Accession

MI0005595

Description

Medicago truncatula mtr-MIR156e precursor miRNA

Literature search

10 open access papers mention mtr-MIR156e
(78 sentences)

Sequence

125925 reads, 636.0 reads per million, 111 experiments

gguugUUGACAGAAGAUAGAGAGCACagaugaugauaugcauuuauauauauauauauauauauauauauauauauauauauauauauauauauauaugaggagcuggagcugcauggagaugaauuuugugcauaucacuccuuuguGCUCUCUAUGCUUCUGUCAUCAcc
(((.(.(((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((((((....)))))))))))))))))))))))))))(.(((....))).)...............)))))))))).)).)))))))))))))).))))))))).))))

Structure

   u U         -              u  -          -----------------------------                           u 
ggu g UGACAGAAG AUAGAGAGCACaga ga ugauaugcau                             uuauauauauauauauauauauauaua a
||| | ||||||||| |||||||||||||| || ||||||||||                             |||||||||||||||||||||||||||  
ccA C ACUGUCUUC UAUCUCUCGuguuu cu acuauacgug                             aguauauauauauauauauauauauau u
   - U         G              c  c          uuuuaaguagagguacgucgaggucgagg                           a 

Annotation confidence High

Genome context

chr8: 31820126-31820297 [+]

Mature mtr-miR156e-5p

• Accession: MIMAT0011081
• Description: Medicago truncatula mtr-miR156e-5p mature miRNA
• Sequence: 6 - UUGACAGAAGAUAGAGAGCAC - 26
• Evidence: experimental ; 454 [2], Northern [2]

Mature mtr-miR156e-3p

• Accession: MIMAT0054771
• Description: Medicago truncatula mtr-miR156e-3p mature miRNA
• Sequence: 149 - GCUCUCUAUGCUUCUGUCAUCA - 170
• Evidence: experimental ; unknown

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None: