Stem-loop mtr-MIR1510b

Accession

MI0010540

Description

Medicago truncatula mtr-MIR1510b precursor miRNA

Literature search

1 open access papers mention mtr-MIR1510b
(2 sentences)

Sequence

3663487 reads, 11302.0 reads per million, 111 experiments

acaucuaguuagucauaccgauaggcgagagagauuugcuacugcaauuguuguuuuacccgcuccucccaucccauggaUCCCUACCAUGUGGACUCCAUCAucaucagauccaaucuugugauaaUAGAGUCACAUGGUCGGUAUCccuggaauggaggaucagguaaaacaacuuuugcuuuagaaaugauucauuucucaucaccuucaucagguuuaugauuucugucugu
(((..(((..(((((((((((((((.(((((((((...(((..((((..(((((((((((.(.((((((.((.(((.((((.((.((((((((.((((.((.(((((.((((...)))).))))).)).)))))))))))).)).)))).))).)))))))).).)))))))))))..))))..))).........))))))).)).)))..))).)))..)))))).)))..)))

Structure

   uc   uu      --   -   --   c  -       ------uug   cu    uu           c c      c  c   u    C  U        G    C  C     c    c 
aca  uag  agucau  acc gau  agg ga gagagau         cua  gcaa  guuguuuuacc g uccucc au cca ggaU CC ACCAUGUG ACUC AU Aucau agau  
|||  |||  ||||||  ||| |||  ||| || |||||||         |||  ||||  ||||||||||| | |||||| || ||| |||| || |||||||| |||| || ||||| |||| c
ugu  guc  uuagua  ugg cua  ucc cu cucuuua         gau  cguu  caacaaaaugg c aggagg ua ggu cCUA GG UGGUACAC UGAG Ua uagug ucua  
   cu   -u      uu   a   cu   a  a       cuuaguaaa   uu    uu           a u      -  a   c    U  C        -    A  a     u    a 

Annotation confidence High

Genome context

chr5: 18612353-18612588 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mtr-MIR1510b

Mature mtr-miR1510b-5p

• Accession: MIMAT0010028
• Description: Medicago truncatula mtr-miR1510b-5p mature miRNA
• Sequence: 81 - UCCCUACCAUGUGGACUCCAUCA - 103
• Evidence: experimental ; Illumina [1-2], Northern [1]

Mature mtr-miR1510b-3p

• Accession: MIMAT0010029
• Description: Medicago truncatula mtr-miR1510b-3p mature miRNA
• Sequence: 128 - UAGAGUCACAUGGUCGGUAUC - 148
• Evidence: experimental ; Illumina [1-2], Northern [1]

References

1. PubMed ID: 19068109
   High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
   Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T
   BMC Genomics (2008) 9:593


2. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105