Stem-loop mtr-MIR156f

Accession

MI0005605

Description

Medicago truncatula mtr-MIR156f precursor miRNA

Literature search

11 open access papers mention mtr-MIR156f
(78 sentences)

Sequence

107292 reads, 554.0 reads per million, 111 experiments

guuugUUGACAGAAGAUAGAGAGCACaucugaacaaacacaaaagacauuguguuugaacaguugugugCUCUCUGCUCUUCUGCCAACAUacu
((.(((((.((((((((((((((((((((((..(((((((((......)))))))))..)))..)))))))))))).))))))).))))).)).

Structure

-  u     A       -            --   aa         aa 
 gu ugUUG CAGAAGA UAGAGAGCACau  cug  caaacacaa  g
 || ||||| ||||||| ||||||||||||  |||  |||||||||   
 ca ACAAC GUCUUCU GUCUCUCgugug  gac  guuuguguu  a
u  U     C       C            uu   aa         ac 

Annotation confidence High

Genome context

chr6: 4845679-4845772 [-]

Mature mtr-miR156f-5p

• Accession: MIMAT0011091
• Description: Medicago truncatula mtr-miR156f-5p mature miRNA
• Sequence: 6 - UUGACAGAAGAUAGAGAGCAC - 26
• Evidence: experimental ; 454 [2], Northern [2]

Mature mtr-miR156f-3p

• Accession: MIMAT0054777
• Description: Medicago truncatula mtr-miR156f-3p mature miRNA
• Sequence: 70 - CUCUCUGCUCUUCUGCCAACAU - 91
• Evidence: experimental ; unknown

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None: