Stem-loop mtr-MIR395a

Accession

MI0001746

Description

Medicago truncatula mtr-MIR395a precursor miRNA

Literature search

5 open access papers mention mtr-MIR395a
(12 sentences)

Sequence

6012 reads, 45.0 reads per million, 111 experiments

uuuuuguugauuguuucuuagAGUUCCUUUGAACGCUUCAUGcaugagaauauguauuuggucuaauauccauuagaaaagauaguucuucaucaAUGAAGUGUUUGGGGGAACUCuuggguucaaccagcacca
....(((((.(((..(((.((((((((((((((((((((((..((((((((...(((((..((((((....))))))..))))))))).))))..)))))))))))))))))))))).)))..))).)))))...

Structure

uuuu     a   uu   u                      Gc    -    aug     gg      a 
    uguug uug  ucu agAGUUCCUUUGAACGCUUCAU  auga gaau   uauuu  ucuaau u
    ||||| |||  ||| ||||||||||||||||||||||  |||| ||||   |||||  ||||||  
    acgac aac  ggg uCUCAAGGGGGUUUGUGAAGUA  uacu cuug   auaga  agauua c
-acc     c   uu   u                      ac    u    ---     aa      c 

Annotation confidence High

Genome context

chr5: 16610555-16610689 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mtr-MIR395a

Mature mtr-miR395a-5p

• Accession: MIMAT0054745
• Description: Medicago truncatula mtr-miR395a-5p mature miRNA
• Sequence: 22 - AGUUCCUUUGAACGCUUCAUG - 42
• Evidence: experimental ; unknown

Mature mtr-miR395a-3p

• Accession: MIMAT0001648
• Description: Medicago truncatula mtr-miR395a-3p mature miRNA
• Sequence: 96 - AUGAAGUGUUUGGGGGAACUC - 116
• Evidence: experimental ; Northern [2]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98