Stem-loop mtr-MIR160f

Accession

MI0018371

Description

Medicago truncatula mtr-MIR160f precursor miRNA

Literature search

6 open access papers mention mtr-MIR160f
(17 sentences)

Sequence

2087 reads, 16.0 reads per million, 105 experiments

aauguuguguuUGCCUGGCUCCCUGCAUGCCAuauaagaggcuucucaaaaugguugacgacccuuuuacuugGCGUGAAGGGAGUCAAGCAGGcagccuaauc
.......(((((((.(((((((((.(((((((..(((((((.((.((((.....)))).)).)))))))..))))))).))))))))).)))))))........

Structure

-aauguug       C         G       ua       c  c    a 
        uguuUGC UGGCUCCCU CAUGCCA  uaagagg uu ucaa a
        ||||||| ||||||||| |||||||  ||||||| || |||| u
        acGGACG ACUGAGGGA GUGCGgu  auuuucc ag aguu g
cuaauccg       A         A       uc       c  c    g 

Annotation confidence High

Genome context

AC233669.2: 28227-28330 [-]

Mature mtr-miR160f-5p

• Accession: MIMAT0055134
• Description: Medicago truncatula mtr-miR160f-5p mature miRNA
• Sequence: 12 - UGCCUGGCUCCCUGCAUGCCA - 32
• Evidence: experimental ; unknown

Mature mtr-miR160f-3p

• Accession: MIMAT0021268
• Description: Medicago truncatula mtr-miR160f-3p mature miRNA
• Sequence: 74 - GCGUGAAGGGAGUCAAGCAGG - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010