Stem-loop mtr-MIR395c

Accession

MI0005070

Description

Medicago truncatula mtr-MIR395c precursor miRNA

Literature search

5 open access papers mention mtr-MIR395c
(12 sentences)

Sequence

4060 reads, 29.0 reads per million, 110 experiments

gAGUUCCUUUGAACGCUUCAUGcaugagaauaucuauuuggucuaauauccauuagaaaagauagucuuuucuucuAUGAAGUGUUUGGGGGAACUC
((((((((((((((((((((((...(((((...((((((..((((((....))))))..))))))....))))).))))))))))))))))))))))

Structure

                      cau     -uau      gg      a 
gAGUUCCUUUGAACGCUUCAUG   gagaa    cuauuu  ucuaau u
||||||||||||||||||||||   |||||    ||||||  ||||||  
CUCAAGGGGGUUUGUGAAGUAu   uucuu    gauaga  agauua c
                      --c     uucu      aa      c 

Annotation confidence High

Genome context

chr5: 16622264-16622360 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR395c

Mature mtr-miR395c-5p

• Accession: MIMAT0054748
• Description: Medicago truncatula mtr-miR395c-5p mature miRNA
• Sequence: 2 - AGUUCCUUUGAACGCUUCAUG - 22
• Evidence: experimental ; unknown

Mature mtr-miR395c-3p

• Accession: MIMAT0003856
• Description: Medicago truncatula mtr-miR395c-3p mature miRNA
• Sequence: 77 - AUGAAGUGUUUGGGGGAACUC - 97
• Evidence: not_experimental

References

1. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638