Stem-loop mtr-MIR160e

Accession

MI0005629

Description

Medicago truncatula mtr-MIR160e precursor miRNA

Literature search

5 open access papers mention mtr-MIR160e
(16 sentences)

Sequence

77376 reads, 783.0 reads per million, 111 experiments

guaugUGCCUGGCUCCCUGUAUGCCAuauaugaagcucauugaaaaaucaaugaccuuuguggaugGCGUAUGAGGAGCCAAGCAUAuucc
..((((((.(((((((.((((((((((.(((((((.(((((((....))))))).))))))).)))))))))).))))))).))))))...

Structure

-gu      C       C          a       c       a 
   augUGC UGGCUCC UGUAUGCCAu uaugaag ucauuga a
   |||||| ||||||| |||||||||| ||||||| |||||||  
   uAUACG ACCGAGG GUAUGCGgua guguuuc aguaacu a
ccu      A       A          g       c       a 

Annotation confidence High

Genome context

chr1: 27301457-27301547 [-]

Mature mtr-miR160e-5p

• Accession: MIMAT0011115
• Description: Medicago truncatula mtr-miR160e-5p mature miRNA
• Sequence: 6 - UGCCUGGCUCCCUGUAUGCCA - 26
• Evidence: experimental ; 454 [2], Northern [2]

Mature mtr-miR160e-3p

• Accession: MIMAT0054791
• Description: Medicago truncatula mtr-miR160e-3p mature miRNA
• Sequence: 67 - GCGUAUGAGGAGCCAAGCAUA - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None: