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High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera |
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| PubMed ID | 19939267 |
| Authors | Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS |
| Journal | BMC Genomics |
| Volume | 10 |
| Pages | 558 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| vvi-MIR156a | MI0006485 | 1556 | gb|CP126666.1| | 8768922 | 8769025 | - | High |
| vvi-MIR156b | MI0006486 | 26501 | gb|CP126651.1| | 5355936 | 5356037 | - | High |
| vvi-MIR156c | MI0006487 | 26109 | gb|CP126651.1| | 856474 | 856577 | - | High |
| vvi-MIR156d | MI0006488 | 26724 | gb|CP126658.1| | 7801624 | 7801726 | - | High |
| vvi-MIR156f | MI0006490 | 459071 | gb|CP126661.1| | 26677591 | 26677695 | + | High |
| vvi-MIR156g | MI0006491 | 459070 | gb|CP126664.1| | 3463022 | 3463124 | - | High |
| vvi-MIR156i | MI0006492 | 459067 | gb|CP126661.1| | 19665189 | 19665291 | - | High |
| vvi-MIR159a | MI0006493 | 0 | gb|CP126662.1| | 21718044 | 21718237 | - | - |
| vvi-MIR159b | MI0006494 | 0 | gb|CP126662.1| | 21720746 | 21720930 | - | - |
| vvi-MIR159c | MI0006495 | 1256 | gb|CP126664.1| | 3048148 | 3048337 | - | Low |
| vvi-MIR160a | MI0006496 | 5 | gb|CP126659.1| | 9923469 | 9923571 | - | Medium |
| vvi-MIR160b | MI0006497 | 2 | gb|CP126657.1| | 3122721 | 3122824 | - | High |
| vvi-MIR160c | MI0006498 | 12 | gb|CP126657.1| | 16773607 | 16773712 | + | High |
| vvi-MIR160d | MI0006499 | 11 | gb|CP126655.1| | 14179647 | 14179748 | + | High |
| vvi-MIR160e | MI0006501 | 92 | gb|CP126660.1| | 5528867 | 5528968 | + | - |
| vvi-MIR162 | MI0006502 | 539 | gb|CP126664.1| | 5124097 | 5124199 | + | High |
| vvi-MIR164a | MI0006503 | 6785 | gb|CP126654.1| | 3668431 | 3668551 | - | High |
| vvi-MIR164b | MI0006504 | 3 | gb|CP126656.1| | 547748 | 547840 | - | - |
| vvi-MIR164c | MI0006505 | 6785 | gb|CP126655.1| | 11253571 | 11253667 | + | - |
| vvi-MIR164d | MI0006506 | 6786 | gb|CP126661.1| | 1476724 | 1476841 | - | High |
| vvi-MIR166a | MI0006507 | 154715 | gb|CP126655.1| | 3329469 | 3329598 | - | High |
| vvi-MIR166b | MI0006508 | 147294 | gb|CP126659.1| | 19918922 | 19919020 | + | High |
| vvi-MIR166c | MI0006509 | 147510 | gb|CP126662.1| | 20001701 | 20001860 | - | High |
| vvi-MIR166d | MI0006510 | 147335 | gb|CP126663.1| | 26947435 | 26947594 | - | High |
| vvi-MIR166e | MI0006511 | 147511 | gb|CP126649.1| | 2071024 | 2071189 | + | High |
| vvi-MIR166f | MI0006512 | 148420 | gb|CP126654.1| | 30092485 | 30092584 | + | High |
| vvi-MIR166g | MI0006513 | 148377 | gb|CP126654.1| | 253602 | 253701 | + | High |
| vvi-MIR166h | MI0006514 | 154729 | gb|CP126652.1| | 6914132 | 6914231 | - | High |
| vvi-MIR167a | MI0006515 | 65191 | gb|CP126648.1| | 1578212 | 1578562 | + | High |
| vvi-MIR167b | MI0006516 | 65519 | gb|CP126661.1| | 7139238 | 7139336 | + | Medium |
| vvi-MIR167c | MI0006517 | 65185 | gb|CP126654.1| | 839028 | 839118 | - | High |
| vvi-MIR167d | MI0006518 | 64722 | gb|CP126654.1| | 844197 | 844311 | - | High |
| vvi-MIR167e | MI0006519 | 65414 | gb|CP126652.1| | 6031611 | 6031700 | + | Medium |
| vvi-MIR168 | MI0006520 | 15147 | gb|CP126649.1| | 20000812 | 20000943 | - | High |
| vvi-MIR169a | MI0006521 | 250 | gb|CP126658.1| | 16364117 | 16364240 | + | High |
| vvi-MIR169y | MI0006522 | 0 | gb|CP126648.1| | 26802950 | 26803197 | + | Medium |
| vvi-MIR169c | MI0006523 | 253 | gb|CP126651.1| | 2269223 | 2269312 | - | High |
| vvi-MIR169e | MI0006525 | 33 | gb|CP126661.1| | 24989643 | 24989791 | - | High |
| vvi-MIR169f | MI0006526 | 245 | gb|CP126648.1| | 12708771 | 12708954 | + | High |
| vvi-MIR169g | MI0006527 | 270 | gb|CP126655.1| | 22317075 | 22317195 | + | High |
| vvi-MIR169j | MI0006528 | 251 | gb|CP126658.1| | 16353062 | 16353183 | + | High |
| vvi-MIR169k | MI0006529 | 251 | gb|CP126658.1| | 16359684 | 16359805 | + | High |
| vvi-MIR169m | MI0006530 | 135 | gb|CP126658.1| | 16611562 | 16611663 | + | High |
| vvi-MIR169p | MI0006531 | 134 | gb|CP126658.1| | 16598136 | 16598237 | + | High |
| vvi-MIR169r | MI0006532 | 13 | gb|CP126658.1| | 16665457 | 16665565 | + | High |
| vvi-MIR169s | MI0006533 | 248 | gb|CP126658.1| | 16687936 | 16688034 | + | High |
| vvi-MIR169t | MI0006534 | 9 | gb|CP126658.1| | 16649893 | 16650002 | + | High |
| vvi-MIR169u | MI0006535 | 11 | gb|CP126658.1| | 16659727 | 16659836 | + | High |
| vvi-MIR171a | MI0006536 | 64 | gb|CP126661.1| | 25397742 | 25397840 | - | Medium |
| vvi-MIR171b | MI0006537 | 63 | gb|CP126659.1| | 5584023 | 5584121 | - | Medium |
| vvi-MIR171c | MI0006538 | 97 | gb|CP126659.1| | 5529371 | 5529473 | - | Medium |
| vvi-MIR171d | MI0006539 | 70 | gb|CP126659.1| | 5529380 | 5529466 | - | Medium |
| vvi-MIR171e | MI0006540 | 7 | gb|CP126658.1| | 5179839 | 5179941 | + | Medium |
| vvi-MIR171f | MI0006541 | 8 | gb|CP126656.1| | 6966784 | 6966886 | + | High |
| vvi-MIR171h | MI0006542 | 4 | gb|CP126664.1| | 2283569 | 2283664 | - | - |
| vvi-MIR171i | MI0006543 | 65 | gb|CP126664.1| | 1349514 | 1349616 | + | High |
| vvi-MIR172c | MI0006546 | 1 | gb|CP126660.1| | 3305310 | 3305447 | + | High |
| vvi-MIR172d | MI0006547 | 123 | gb|CP126655.1| | 13831740 | 13831848 | + | High |
| vvi-MIR319b | MI0006548 | 6 | gb|CP126648.1| | 4148922 | 4149115 | + | High |
| vvi-MIR319c | MI0006549 | 425 | gb|CP126649.1| | 676368 | 676549 | - | High |
| vvi-MIR319f | MI0006550 | 146 | gb|CP126653.1| | 9150552 | 9150744 | + | High |
| vvi-MIR319g | MI0006551 | 3 | gb|CP126664.1| | 4093954 | 4094175 | - | High |
| vvi-MIR390 | MI0006552 | 1062 | gb|CP126653.1| | 8172842 | 8172981 | + | High |
| vvi-MIR393b | MI0006553 | 4 | gb|CP126660.1| | 4346752 | 4346834 | + | Medium |
| vvi-MIR394a | MI0006554 | 3 | gb|CP126659.1| | 19107573 | 19107661 | - | Low |
| vvi-MIR395a | MI0006556 | 475 | gb|CP126648.1| | 6487125 | 6487216 | + | High |
| vvi-MIR395b | MI0006557 | 475 | gb|CP126648.1| | 6461962 | 6462051 | + | High |
| vvi-MIR395c | MI0006558 | 479 | gb|CP126648.1| | 6459212 | 6459303 | - | High |
| vvi-MIR395d | MI0006559 | 475 | gb|CP126648.1| | 6472061 | 6472146 | + | High |
| vvi-MIR395e | MI0006560 | 479 | gb|CP126648.1| | 6464546 | 6464637 | + | High |
| vvi-MIR395f | MI0006561 | 475 | gb|CP126648.1| | 6448840 | 6448925 | + | High |
| vvi-MIR395g | MI0006562 | 476 | gb|CP126648.1| | 6441411 | 6441496 | + | High |
| vvi-MIR395h | MI0006563 | 479 | gb|CP126648.1| | 6525460 | 6525551 | + | High |
| vvi-MIR395i | MI0006564 | 476 | gb|CP126648.1| | 6521450 | 6521535 | + | High |
| vvi-MIR395j | MI0006565 | 476 | gb|CP126648.1| | 6511834 | 6511919 | + | High |
| vvi-MIR395k | MI0006566 | 479 | gb|CP126648.1| | 6464547 | 6464638 | + | High |
| vvi-MIR395l | MI0006567 | 476 | gb|CP126648.1| | 6517906 | 6517992 | + | High |
| vvi-MIR395m | MI0006568 | 475 | gb|CP126648.1| | 6516619 | 6516710 | + | High |
| vvi-MIR396a | MI0006569 | 357 | gb|CP126656.1| | 7324172 | 7324287 | - | Medium |
| vvi-MIR396b | MI0006570 | 357 | gb|CP126658.1| | 5223311 | 5223418 | + | Medium |
| vvi-MIR396d | MI0006571 | 345 | gb|CP126658.1| | 5229631 | 5229750 | - | High |
| vvi-MIR398a | MI0006572 | 8 | gb|CP126648.1| | 727773 | 727875 | + | High |
| vvi-MIR399a | MI0006573 | 3 | gb|CP126657.1| | 8089582 | 8089678 | + | High |
| vvi-MIR399b | MI0006574 | 6 | gb|CP126663.1| | 20403247 | 20403363 | - | High |
| vvi-MIR399g | MI0006576 | 3 | gb|CP126657.1| | 8081379 | 8081491 | - | High |
| vvi-MIR399h | MI0006577 | 2 | gb|CP126657.1| | 8083677 | 8083766 | + | High |
| vvi-MIR408 | MI0006578 | 4222 | gb|CP126654.1| | 5392426 | 5392532 | + | High |
| vvi-MIR479 | MI0006579 | 1190 | gb|CP126663.1| | 27115967 | 27116060 | + | High |
| vvi-MIR535a | MI0006580 | 114432 | gb|CP126654.1| | 20617261 | 20617361 | - | High |
| vvi-MIR535b | MI0006581 | 114432 | gb|CP126654.1| | 20593503 | 20593603 | - | High |
| vvi-MIR535c | MI0006583 | 114437 | gb|CP126654.1| | 20570683 | 20570783 | - | - |
| vvi-MIR169b | MI0007940 | 4 | gb|CP126658.1| | 16515763 | 16515867 | + | High |
| vvi-MIR169h | MI0007941 | 4 | gb|CP126658.1| | 16402329 | 16402429 | + | High |
| vvi-MIR169i | MI0007942 | 0 | gb|CP126658.1| | 16408917 | 16409021 | + | High |
| vvi-MIR169l | MI0007943 | 86 | gb|CP126658.1| | 16436193 | 16436295 | + | High |
| vvi-MIR169n | MI0007944 | 251 | gb|CP126658.1| | 16630566 | 16630666 | + | Medium |
| vvi-MIR169o | MI0007945 | 86 | gb|CP126658.1| | 16441233 | 16441335 | + | High |
| vvi-MIR169q | MI0007946 | 25 | gb|CP126658.1| | 16634810 | 16634906 | + | High |
| vvi-MIR169v | MI0007947 | 103 | gb|CP126658.1| | 16716249 | 16716344 | + | High |
| vvi-MIR169w | MI0007948 | 246 | gb|CP126661.1| | 29892898 | 29893040 | + | High |
| vvi-MIR169x | MI0007949 | 19 | gb|CP126664.1| | 823489 | 823613 | - | Medium |
| vvi-MIR171g | MI0007950 | 0 | gb|CP126665.1| | 3275060 | 3275135 | + | - |
| vvi-MIR319e | MI0007951 | 3 | gb|CP126658.1| | 4294212 | 4294318 | + | High |
| vvi-MIR393a | MI0007952 | 1 | gb|CP126663.1| | 22191569 | 22191694 | - | High |
| vvi-MIR394c | MI0007953 | 4 | gb|CP126665.1| | 3566220 | 3566321 | - | Low |
| vvi-MIR395n | MI0007954 | 0 | gb|CP126664.1| | 6804025 | 6804161 | - | High |
| vvi-MIR396c | MI0007955 | 332 | gb|CP126651.1| | 5119080 | 5119187 | - | High |
| vvi-MIR397a | MI0007956 | 472 | gb|CP126657.1| | 4837158 | 4837275 | + | High |
| vvi-MIR398b | MI0007958 | 27 | gb|CP126653.1| | 19544929 | 19545016 | - | High |
| vvi-MIR398c | MI0007959 | 27 | gb|CP126653.1| | 18580862 | 18580949 | + | High |
| vvi-MIR399c | MI0007960 | 4 | gb|CP126662.1| | 18250355 | 18250436 | + | High |
| vvi-MIR399i | MI0007963 | 12 | gb|CP126649.1| | 3928234 | 3928355 | + | High |
| vvi-MIR403a | MI0007964 | 21 | gb|CP126652.1| | 1849161 | 1849275 | - | Medium |
| vvi-MIR403b | MI0007965 | 22 | gb|CP126652.1| | 1317186 | 1317271 | - | Medium |
| vvi-MIR403c | MI0007966 | 21 | gb|CP126652.1| | 1314727 | 1314841 | - | Medium |
| vvi-MIR403d | MI0007967 | 22 | gb|CP126652.1| | 1752010 | 1752095 | - | Medium |
| vvi-MIR403e | MI0007968 | 21 | gb|CP126652.1| | 1750364 | 1750478 | - | High |
| vvi-MIR403f | MI0007969 | 21 | gb|CP126654.1| | 4558125 | 4558232 | - | High |
| vvi-MIR477a | MI0007970 | 6 | gb|CP126648.1| | 27509069 | 27509162 | + | Medium |
| vvi-MIR482 | MI0007971 | 1000 | gb|CP126664.1| | 5919195 | 5919311 | + | High |
| vvi-MIR171j | MI0031743 | 70 | gb|CP126657.1| | 1068609 | 1068708 | + | Medium |
| vvi-MIR156e | MI0006489 | 5 | gb|CP126658.1| | 1503060 | 1503167 | - | High |
| vvi-MIR169d | MI0006524 | 604 | gb|CP126658.1| | 16357631 | 16357750 | + | High |
| vvi-MIR172a | MI0006544 | 0 | gb|CP126653.1| | 20702862 | 20702971 | + | High |
| vvi-MIR172b | MI0006545 | 0 | gb|CP126660.1| | 6262468 | 6262585 | + | High |
| vvi-MIR394b | MI0006555 | 2 | gb|CP126665.1| | 1447356 | 1447448 | - | High |
| vvi-MIR399e | MI0006575 | 3 | gb|CP126657.1| | 8092352 | 8092463 | - | High |
| vvi-MIR156h | MI0007939 | 9 | gb|CP126659.1| | 4112428 | 4112655 | + | - |
| vvi-MIR399d | MI0007961 | 0 | gb|CP126657.1| | 8088153 | 8088257 | - | Medium |
| vvi-MIR399f | MI0007962 | None | gb|CP126657.1| | 8095939 | 8096045 | - | - |
| vvi-MIR828a | MI0007972 | 6 | gb|CP126663.1| | 27265728 | 27265849 | + | High |
| vvi-MIR845a | MI0007974 | 18 | gb|CP126663.1| | 26054249 | 26054690 | + | Low |
| vvi-MIR845b | MI0007975 | 18 | gb|CP126649.1| | 14293955 | 14294396 | + | Low |
| vvi-MIR845c | MI0007976 | 0 | gb|CP126654.1| | 500028 | 500117 | + | - |
| vvi-MIR845d | MI0007977 | 0 | gb|CP126651.1| | 9870916 | 9871046 | - | Low |
| vvi-MIR845e | MI0007978 | 0 | gb|CP126652.1| | 15091702 | 15091832 | + | Low |
| vvi-MIR477b | MI0016025 | 4 | gb|CP126649.1| | 1058225 | 1058341 | + | High |