Stem-loop vvi-MIR535a

Accession

MI0006580

Description

Vitis vinifera vvi-MIR535a precursor miRNA

Literature search

4 open access papers mention vvi-MIR535a
(15 sentences)

Sequence

1706689 reads, 114430 reads per million, 2 experiments

uguaauugcuUGACAACGAGAGAGAGCACGCuagucagcauucaugcgaggaacaugacuguguacaggcgugcucucucucgcugucauacaaucuucuc
....((((..(((((.((((((((((((((((.((..(((.(((((.......))))).)))..)).)))))))))))))))).)))))..))))......

Structure

--ugua    cu     A                a  ca   u     cg 
      auug  UGACA CGAGAGAGAGCACGCu gu  gca ucaug  a
      ||||  ||||| |||||||||||||||| ||  ||| |||||  g
      uaac  acugu gcucucucucgugcgg ca  ugu aguac  g
cucuuc    au     c                a  ug   c     aa 

Annotation confidence Not enough data

Genome context

chr7: 433583-433683 [-]

Mature vvi-miR535a

• Accession: MIMAT0005735
• Description: Vitis vinifera vvi-miR535a mature miRNA
• Sequence: 11 - UGACAACGAGAGAGAGCACGC - 31
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558