Stem-loop vvi-MIR169s

Accession

MI0006533

Description

Vitis vinifera vvi-MIR169s precursor miRNA

Literature search

8 open access papers mention vvi-MIR169s
(15 sentences)

Sequence

130716 reads, 638.0 reads per million, 168 experiments

gaaaguggauugCAGCCAAGGAUGACUUGCCGGcacuuggcauuaggcaccaucgaucaucuucccGGCAAGUUGUUCCUGGCUACAUucugcucucuu
((.((((((.((.(((((.((((((((((((((....(((.........)))............)))))))))))))).))))).)).)))))).))..

Structure

--  a      u  C     A              --------cacu   cau 
  ga agugga ug AGCCA GGAUGACUUGCCGG            ugg   u
  || |||||| || ||||| ||||||||||||||            |||   a
  cu ucgucu AC UCGGU CUUGUUGAACGGcc            acc   g
uu  c      U  A     C              cuucuacuagcu   acg 

Annotation confidence High

Genome context

gb|CP126658.1|: 16687936-16688034 [+]

Mature vvi-miR169s-5p

• Accession: MIMAT0005688
• Description: Vitis vinifera vvi-miR169s-5p mature miRNA
• Sequence: 13 - CAGCCAAGGAUGACUUGCCGG - 33
• Evidence: experimental ; Array [2]

Mature vvi-miR169s-3p

• Accession: MIMAT0055817
• Description: Vitis vinifera vvi-miR169s-3p mature miRNA
• Sequence: 67 - GGCAAGUUGUUCCUGGCUACAU - 88
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558