Stem-loop vvi-MIR394b

Accession

MI0006555

Description

Vitis vinifera vvi-MIR394b precursor miRNA

Literature search

3 open access papers mention vvi-MIR394b
(12 sentences)

Sequence

29 reads, 2 reads per million, 2 experiments

acagaguuuaUUGGCAUUCUGUCCACCUCCcaucucuugaaaaucucucuuuucucucuguggaggugggcauacugccaaccaagcucuguu
(((((((((.((((((...(((((((((((((......(((((......)))))....)).)))))))))))...))))))..))))))))).

Structure

-         -a      UUC           -  ucucuu     uc 
 acagaguuu  UUGGCA   UGUCCACCUCC ca      gaaaa  u
 |||||||||  ||||||   ||||||||||| ||      |||||   
 ugucucgaa  aaccgu   acggguggagg gu      cuuuu  c
u         cc      cau           u  --cucu     cu 

Annotation confidence Not enough data

Genome context

chr18: 1413038-1413130 [-]

Mature vvi-miR394b

• Accession: MIMAT0005710
• Description: Vitis vinifera vvi-miR394b mature miRNA
• Sequence: 11 - UUGGCAUUCUGUCCACCUCC - 30
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467